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| 1 | The willow genome and divergent evolution from poplar after the common genome duplication显示文摘 | Xiaogang Dai Quanjun Hu Qingle Cai Kai Feng Ning Ye Gerald A Tuskan Richard Milne Yingnan Chen Zhibing Wan Zefu Wang Wenchun Luo Kun Wang Dongshi Wan Mingxiu Wang Jun Wang Jianquan Liu Tongming Yin | 2014 | Cell Research2014，24，10： | 28 |
| 2 | mTOR signaling in skeletal development and disease显示文摘The mammalian/mechanistic target of rapamycin(m TOR) is a serine/threonine protein kinase that integrates inputs from nutrients and growth factors to control many fundamental cellular processes through two distinct protein complexes m TORC1 and m TORC2.Recent mouse genetic studies have established that m TOR pathways play important roles in regulating multiple aspects of skeletal development and homeostasis. In addition, m TORC1 has emerged as a common effector mediating the bone anabolic effect of Igf1,Wnt and Bmp. Dysregulation of m TORC1 could contribute to various skeletal diseases including osteoarthritis and osteoporosis.Here we review the current understanding of m TOR signaling in skeletal development and bone homeostasis, as well as in the maintenance of articular cartilage. We speculate that targeting m TOR signaling may be a valuable approach for treating skeletal diseases. | Jianquan Chen Fanxin Long | 2018 | Bone Research2018，6，1： | 14 |
| 3 | Prostate cancer in Asia:A collaborative report显示文摘The incidence of prostate cancer(PCa)within Asian population used to be much lower than in the Western population;however,in recent years the incidence and mortality rate of PCa in some Asian countries have grown rapidly.This collaborative report summarized the latest epidemiology information,risk factors,and racial differences in PCa diagnosis,current status and new trends in surgery management and novel agents for castration-resistant prostate cancer.We believe such information would be helpful in clinical decision making for urologists and oncologists,health-care ministries and medical researchers. | Rui Chen Shancheng Ren 无 Ming Kwong Yiu Ng Chi Fai Wai Sam Cheng Lap Hong Ian Seiji Naito Tadashi Matsuda Elijah Kehinde Ali Kural Jason Yichun Chiu Rainy Umbas Qiang Wei Xiaolei Shi Liqun Zhou Jian Huang Yiran Huang Liping Xie Lulin Ma Changjun Yin Danfeng Xu Kexin Xu Zhangqun Ye Chunxiao Liu Dingwei Ye Xin Gao Qiang Fu Jianquan Hou Jianlin Yuan Dalin He Tiejun Pan Qiang Ding Fengshuo Jin Benkang Shi Gongxian Wang Xiuheng Liu Dongwen Wang Zhoujun Shen Xiangbo Kong Wanhai Xu Yaoliang Deng Haibo Xia Alexa NCohen Xu Gao Chuanliang Xu Yinghao Sun | 2014 | Asian Journal of Urology2014，1，1： | 13 |
| 4 | Co-occurrence prediction in a large location-based social network显示文摘 | Rong-Hua LI Jianquan LIU Jeffrey Xu YU Hanxiong CHEN Hiroyuki KITAGAWA | 2013 | Frontiers of Computer Science2013，7，2： | 10 |
| 5 | A high-quality Actinidia chinensis(kiwifruit)genome显示文摘Actinidia chinensis(kiwifruit)is a perennial horticultural crop species of the Actinidiaceae family with high nutritional and economic value.Two versions of the A.chinensis genomes have been previously assembled,based mainly on relatively short reads.Here,we report an improved chromosome-level reference genome of A.chinensis(v3.0),based mainly on PacBio long reads and Hi-C data.The high-quality assembled genome is 653 Mb long,with 0.76%heterozygosity.At least 43%of the genome consists of repetitive sequences,and the most abundant long terminal repeats were further identified and account for 23.38%of our novel genome.It has clear improvements in contiguity,accuracy,and gene annotation over the two previous versions and contains 40,464 annotated protein-coding genes,of which 94.41%are functionally annotated.Moreover,further analyses of genetic collinearity revealed that the kiwifruit genome has undergone two whole-genome duplications:one affecting all Ericales families near the K-T extinction event and a recent genus-specific duplication.The reference genome presented here will be highly useful for further molecular elucidation of diverse traits and for the breeding of this horticultural crop,as well as evolutionary studies with related taxa. | Haolin Wu Tao Ma Minghui Kang Fandi Ai Junlin Zhang Guanyong Dong Jianquan Liu | 2019 | Horticulture Research2019，6，1： | 10 |
| 6 | Phylogenomic approaches to deciphering the tree of life显示文摘 | Jun Wen Jianquan Liu Song Ge Qiu-Yun (Jenny) Xiang Elizabeth A. Zimmer | 2015 | Journal of Systematics and Evolution2015，53，5： | 9 |
| 7 | Optically pumped terahertz sources显示文摘High-power terahertz(THz) generation in the frequency range of 0.1-10 THz has been a fast-developing research area ever since the beginning of the THz boom two decades ago, enabling new technological breakthroughs in spectroscopy, communication, imaging,etc. By using optical(laser) pumping methods with near-or mid-infrared(IR) lasers, flexible and practical THz sources covering the whole THz range can be realized to overcome the shortage of electronic THz sources and now they are playing important roles in THz science and technology. This paper overviews various optically pumped THz sources, including femtosecond laser based ultrafast broadband THz generation, monochromatic widely tunable THz generation, single-mode on-chip THz source from photomixing, and the traditional powerful THz gas lasers. Full descriptions from basic principles to the latest progress are presented and their advantages and disadvantages are discussed as well. It is expected that this review gives a comprehensive reference to researchers in this area and additionally helps newcomers to quickly gain understanding of optically pumped THz sources. | ZHONG Kai SHI Wei XU DeGang LIU PengXiang WANG YuYe MEI JiaLin YAN Chao FU ShiJie YAO JianQuan | 2017 | Science China(Technological Sciences)2017，60，12： | 9 |
| 8 | Terahertz metasurface zone plates with arbitrary polarizations to a fixed polarization conversion显示文摘Metasurfaces that can realize the polarization manipulation of electromagnetic waves on the sub-wavelength scale have become an emerging research field.Here,a novel strategy of combining the metasurface and Fresnel zone plate to form a metasurface zone plate is proposed to realize the conversion from nearly arbitrary polarizations to a fixed polarization.Specifically,when one polarized wave is incident on adjacent ring zones constructed by different types of meta-atoms,the transmitted waves generated by odd-numbered and even-numbered ring zones converge at the same focus and superimpose to generate a fixed polarized wave.As function demonstrations,we have designed two types of metasurface zone plates:one is a focused linear polarizer,and the other can convert nearly arbitrary polarized waves into focused circularly polarized waves.The simulated and measured results are consistent with theoretical expectations,suggesting that the proposed concept is flexible and feasible.Our work provides an alternative platform for polarization manipulation and may vigorously promote the development of polarization photonic devices. | Zhen Yue Jitao Li Jie Li Chenglong Zheng Jingyu Liu Guocui Wang Hang Xu Mingyang Chen Yating Zhang Yan Zhang Jianquan Yao | 2022 | Opto-Electronic Science2022，1，3： | 9 |
| 9 | Dynamic phase assembled terahertz metalens for reversible conversion between linear polarization and arbitrary circular polarization显示文摘If a metalens integrates the circular polarization(CP)conversion function,the focusing lens together with circular-polariz-ing lens(CPL)in traditional cameras may be replaced by a metalens.However,in terahertz(THz)band,the reported metalenses still do not obtain the perfect and strict single-handed CP,because they were constructed via Pancharatnam-Berry phase so that CP conversion contained both left-handed CP(LCP)and right-handed CP(RCP)components.In this paper,a silicon based THz metalens is constructed using dynamic phase to obtain single-handed CP conversion.Also,we can rotate the whole metalens at a certain angle to control the conversion of multi-polarization states,which can simply manipulate the focusing for incident linear polarization(LP)THz wave in three polarization conversion states,in-cluding LP without conversion,LCP and RCP.Moreover,the polarization conversion behavior is reversible,that is,the THz metalens can convert not only the LP into arbitrary single-handed CP,but also the LCP and RCP into two perpen-dicular LP,respectively.The metalens is expected to be used in advanced THz camera,as a great candidate for tradi-tional CPL and focusing lens group,and also shows potential application in polarization imaging with discriminating LCP and RCP. | Jitao Li Guocui Wang Zhen Yue Jingyu Liu Jie Li Chenglong Zheng Yating Zhang Yan Zhang Jianquan Yao | 2022 | Opto-Electronic Advances2022，5，1： | 9 |
| 10 | A chromosome-scale genome assembly of Isatis indigotica,an important medicinal plant used in traditional Chinese medicine显示文摘Isatis indigotica(2n=14)is an important medicinal plant in China.Its dried leaves and roots(called Isatidis Folium and Isatidis Radix,respectively)are broadly used in traditional Chinese medicine for curing diseases caused by bacteria and viruses such as influenza and viral pneumonia.Various classes of compounds isolated from this species have been identified as effective ingredients.Previous studies based on transcriptomes revealed only a few candidate genes for the biosynthesis of these active compounds in this medicinal plant.Here,we report a high-quality chromosome-scale genome assembly of I.indigotica with a total size of 293.88 Mb and scaffold N50=36.16 Mb using single-molecule real-time long reads and high-throughput chromosome conformation capture techniques.We annotated 30,323 highconfidence protein-coding genes.Based on homolog searching and functional annotations,we identified many candidate genes involved in the biosynthesis of main active components such as indoles,terpenoids,and phenylpropanoids.In addition,we found that some key enzyme-coding gene families related to the biosynthesis of these components were expanded due to tandem duplications,which likely drove the production of these major active compounds and explained why I.indigotica has excellent antibacterial and antiviral activities.Our results highlighted the importance of genome sequencing in identifying candidate genes for metabolite synthesis in medicinal plants. | Minghui Kang Haolin Wu Qiao Yang Li Huang Quanjun Hu Tao Ma Zaiyun Li Jianquan Liu | 2020 | Horticulture Research2020，7，1： | 9 |
| 11 | Percent free prostate-specific antigen for prostate cancer diagnosis in Chinese men with a PSA of 4.0-10.0 ng/mL:Results from the Chinese Prostate Cancer Consortium显示文摘Objective:To test the diagnostic performance of percent free prostate-specific antigen(%fPSA)in predicting any prostate cancer(PCa)and high-grade prostate cancer(HGPCa)in a retrospective multi-center biopsy cohort with a PSA level of 4.0e10.0 ng/mL in China.Methods:Consecutive patients with a PSA of 4.0-10.0 ng/mL who underwent transrectal ultrasound-guided biopsy were enrolled at 16 Chinese medical centers from January 1st,2010 to December 31st,2013.Total and free serum PSA determinations were performed using three types of electro-chemiluminescence immunoassays recalibrated to the World Health Organization(WHO)standard.The diagnostic accuracy of PSA,%fPSA,and %fPSA in combination with PSA(%fPSA t PSA)was determined using the area under the receiver operating characteristic(ROC)curve(AUC).Results:A total of 2310 consecutive men with PSA levels between 4.0 and 10.0 ng/mL were included,and the detection rate of PCa was 25.1%.The AUC of%fPSA and %fPSA t PSA in predicting any PCa was superior to PSA alone in men aged≥60 years(0.623 vs.0.534,p<0.0001)but not in men aged 40e59 years(0.517 vs.0.518,p=0.939).Similar result was yield in predicting HGPCa.Conclusion:In a clinical setting of Chinese men with 4.0e10.0 ng/mL PSA undergoing initial prostate biopsy,adding %fPSA to PSA can moderately improve the diagnostic accuracy for any PCa and HGPCa compared with PSA alone in patients≥60 but not in patients aged 40-59 years. | Rui Chen Liping Xie Xiaobing Cai Yiran Huang Liqun Zhou Lulin Ma Xu Gao Chuanliang Xu Shancheng Ren Pengfei Shao Danfeng Xu Kexin Xu Zhangqun Ye Chunxiao Liu Dingwei Ye Li Lu Qiang Fu Jianquan Hou Jianlin Yuan Dalin He Tie Zhou Fubo Wang Biming He Yinghao Sun | 2015 | Asian Journal of Urology2015，2，2： | 8 |
| 12 | Perceptual video hashing robust against geometric distortions显示文摘In this paper,we propose a robust perceptual hashing algorithm by using video luminance histogram in shape.The underlying robustness principles are based on three main aspects:1) Since the histogram is independent of position of a pixel,the algorithm is resistant to geometric deformations; 2) the hash is extracted from the spatial Gaussian-filtering low-frequency component for those common video processing operations such as noise corruption,low-pass filtering,lossy compression,etc.; 3) a temporal Gaussian-filtering operation is designed so that the hash is resistant to temporal desynchronization operations,such as frame rate change and dropping.As a result,the hash function is robust to common geometric distortions and video processing operations.Experimental results show that the proposed hashing strategy can provide satisfactory robustness and uniqueness. | XIANG ShiJun YANG JianQuan HUANG JiWu | 2012 | Science China(Information Sciences)2012，55，7： | 5 |
| 13 | Location patterns of urban industry in Shanghai and implications for sustainability显示文摘瓷器经济经历了快速的转变并且工业重构。术语城市的工业在中国城市经历重构以内描述工业的一种特别类型。给也从城市中心关门了或重定位到城市的穗并且在以外的工业公司的高百分比,突现的全球城市象上海那样,为本地经济、城市的开发正在实现策略,它在城市中心和城市的穗包含城市的工业升级的众多的公司。这研究试图用 2008 微地理的数据在上海城市的区域以内分析七个城市的工业扇区的地点模式。为了避免统一问题(MAUP ) 问题,包括最近的邻居分析的四项基于距离的措施,核密度评价, K 功能和合作地点的可修改的 Areal,商广泛地被使用了分析并且比较在七个部门之间的集中和合作地点。结果揭示也与距离和有趣的合作地点变化的迥异的模式。结果如下:城市中心和城市的穗从城市中心与 20-30 km 有城市的工业公司,而是地区的最高的紧张是为大多数范畴的一个分水岭;集中的度与距离变化,在更短的距离更弱,增加直到 30 km 的最大的距离然后减少直到 50 km;为所有城市的工业,有模式的三种类型,在距离的一个改变的范围的聚类的、随机、分散的分发的混合。因而,这份报纸主张城市的工业的地点模式思考阶段特定的工业重构和空间转变,由可持续性目的调节了。 | CAO Weidong LI Yingying CHENG Jianquan Steven MILLINGTON | 2017 | Journal of Geographical Sciences2017，27，7： | 5 |
| 14 | WGDI:A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes显示文摘Evidence of whole-genome duplications(WGDs)and subsequent karyotype changes has been detected in most major lineages of living organisms on Earth.To clarify the complex resulting multi-layered patterns of gene collinearity in genome analyses,there is a need for convenient and accurate toolkits.To meet this need,we developed WGDI(Whole-Genome Duplication Integrated analysis),a Python-based command-line tool that facilitates comprehensive analysis of recursive polyploidization events and cross-species genome alignments.WGDI supports three main workflows(polyploid inference,hierarchical inference of genomic homology,and ancestral chromosome karyotyping)that can improve the detection of WGD and characterization of WGD-related events based on high-quality chromosome-level genomes.Significantly,it can extract complete synteny blocks and facilitate reconstruction of detailed karyotype evolution.This toolkit is freely available at GitHub(http://gffzz188fe103f8f1460asq5k9pc0kkx996xkk.ffgz.tsg.suse.edu.cn/SunPengChuan/wgdi).As an example of its application,WGDI convincingly clarified karyotype evolution in Aquilegia coerulea and Vitis vinifera following WGDs and rejected the hypothesis that Aquilegia contributed as a parental lineage to the allopolyploid origin of core dicots. | Pengchuan Sun Beibei Jiao Yongzhi Yang Lanxing Shan Ting Li Xiaonan Li Zhenxiang Xi Xiyin Wang Jianquan Liu | 2022 | Molecular Plant2022，15，12： | 5 |
| 15 | High-average-power, high-repetition-rate tunable terahertz difference frequency generation with GaSe crystal pumped by 2 μm dual-wavelength intracavity KTP optical parametric oscillator显示文摘We have demonstrated a high-average-power,high-repetition-rate optical terahertz(THz)source based on difference frequency generation(DFG)in the GaSe crystal by using a near-degenerate 2μm intracavity KTP optical parametric oscillator as the pump source.The power of the 2μm dual-wavelength laser was up to 12.33 W with continuous tuning ranges of 1988.0–2196.2 nm/2278.4–2065.6 nm for two waves.Different GaSe cystal lengths have been experimentally investigated for the DFG THz source in order to optimize the THz output power,which was in good agreement with the theoretical analysis.Based on an 8 mm long GaSe crystal,the THz wave was continuously tuned from 0.21 to 3 THz.The maximum THz average power of 1.66μW was obtained at repetition rate of 10 kHz under 1.48 THz.The single pulse energy amounted to 166 pJ and the conversion efficiency from 2 μm laser to THz output was 1.68×10^(-6).The signal-to-noise ratio of the detected THz voltage was 23 dB.The acceptance angle of DFG in the GaSe crystal was measured to be 0.16°. | DEXIAN YAN YUYE WANG DEGANG XU PENGXIANG LIU CHAO YAN JIA SHI HONGXIANG LIU YIXIN HE LONGHUANG TANG JIANCHEN FENG JIANQIN GUO WEI SHI KAI ZHONG YUEN H.TSANG JIANQUAN YAO | 2017 | Photonics Research2017，5，2： | 5 |
| 16 | Terahertz wavefront shaping with multi-channel polarization conversion based on all-dielectric metasurface显示文摘Polarization manipulation of electromagnetic wave or polarization multiplexed beam shaping based on metasurfaces has been reported in various frequency bands.However,it is difficult to shape the beam with multi-channel polarization conversion in a single metasurface.Here,we propose a new method for terahertz wavefront shaping with multi-channel polarization conversion via all-silicon metasurface,which is based on the linear shape birefringence effect in spatially interleaved anisotropic meta-atoms.By superimposing the eigen-and non-eigen-polarization responses of the two kinds of meta-atoms,we demonstrate the possibility for high-efficiency evolution of several typical polarization states with two independent channels for linearly polarized waves.The measured polarization conversion efficiency is higher than 70%in the range of 0.9–1.3 THz,with a peak value of 89.2%at 1.1 THz.In addition,when more other polarization states are incident,combined with the integration of sub-arrays,we can get more channels for both polarization conversion and beam shaping.Simulated and experimental results verify the feasibility of this method.The proposed method provides a new idea for the design of terahertz multi-functional metadevices. | JIE LI CHENGLONG ZHENG JITAO LI GUOCUI WANG JINGYU LIU ZHEN YUE XUANRUO HAO YUE YANG FUYU LI TINGTING TANG YATING ZHANG YAN ZHANG JIANQUAN YAO | 2021 | Photonics Research2021，9，10： | 5 |
| 17 | Copper-Promoted Conversion of Aromatic Amines into Trifluoromethylated Arenes: One-Pot Sandmeyer Trifluoromethylation显示文摘 | Jianquan Hong Guifu Wang Lianguang Huo Changge Zheng | 2017 | Chinese Journal of Chemistry2017，35，11： | 5 |
| 18 | Microstructure evolution of an Mg-Zn-Nd-Zr magnesium alloy during recrystallization and partial remelting process显示文摘To obtain a spheroidal microstructure of a semi-solid Mg-Zn-Nd-Zr alloy,which is favorable for the subsequent thixocasting process,the recrystallization and partial remelting(RAP)method was used in this study,and the microstructure evolution of the alloy and the mechanism of the shape factor change during the RAP process were invesigated.The as-cast Mg-Zn-Nd-Zr alloy was prepared in a metal mold and then extruded into bars with an extrusion ratio of 16:1.Partial remelting was carried out on the extruded samples at 589℃(at a heating rate of 0.5℃·s-1)for different holding times ranging from 0 to 90 min.To examine the effect of heating rate,partial remelting of samples at the heating rate of 2℃·s-1was also performed.Results show that the extruded microstructure rapidly evolutes into recrystallized grains in the semi-solid state;the liquid f ilm initially forms at grain boundaries during the partial remelting,and then gradually changes from continuous into discontinuous state with the increase of holding time;this results in the agglomeration of adjacent grains and the decrease in shape factor.The value of shape factor increases continuously with holding time at f irst and reaches the maximum 0.62 when holding for 60 min,while decreases rapidly after a prolonged holding time.Moreover,local melting,mainly due to the inhomogeneous deformation during extrusion,becomes more signif icant and less uniformly distributed at a relatively higher reheating rate.The Mg-Zn-Nd-Zr magnesium alloy components have been thixo-cast successfully using the RAP method,which strongly proves the feasibility of RAP process in Mg-Zn-Nd-Zr alloy. | Tao Jianquan Wan Yuanyuan Sun Changjian Su Zhiquan Deng Tianquan Huang Jing | 2013 | China Foundry2013，10，4： | 4 |
| 19 | Coordination Control of Power Flow Controller and Hybrid DC Circuit Breaker in MVDC Distribution Networks显示文摘The two main challenges of medium voltage direct current(MVDC)distribution network are the flexible control of power flow(PF)and fault protection.In this paper,the power flow controller(PFC)is introduced to regulate the PF and inhibit the fault current during the DC fault.The coordination strategy of series-parallel PFC(SP-PFC)and hybrid DC circuit breaker(DCCB)is proposed.By regulating the polarity and magnitude of SP-PFC output voltage during the fault,the rising speed of fault current can be suppressed so as to reduce the breaking current of hybrid DCCB.The access mode of SP-PFC to the MVDC distribution network and its topology are analyzed,and the coordination strategy between SP-PFC and hybrid DCCB is investigated.Moreover,the emergency control and bypass control strategies of SP-PFC are developed.On this basis,the mathematical model of SP-PFC in different fault stages is derived.With the equivalent model of SP-PFC,the fault current of the MVDC distribution network can be calculated accurately.A simulation model of the MVDC distribution network containing SP-PFC is established in MATLAB/Simulink.The fault current calculation result is compared with the simulation result,and the effectiveness of the proposed coordination strategy is verified. | Jianquan Liao Niancheng Zhou Zian Qin Pavel Purgat Qianggang Wang Pavol Bauer | 2021 | Journal of Modern Power Systems and Clean Energy2021，9，6： | 4 |
| 20 | Pose Robust Low-resolution Face Recognition via Coupled Kernel-based Enhanced Discriminant Analysis显示文摘Most face recognition techniques have been successful in dealing with high-resolution(HR) frontal face images. However, real-world face recognition systems are often confronted with the low-resolution(LR) face images with pose and illumination variations. This is a very challenging issue, especially under the constraint of using only a single gallery image per person.To address the problem, we propose a novel approach called coupled kernel-based enhanced discriminant analysis(CKEDA).CKEDA aims to simultaneously project the features from LR non-frontal probe images and HR frontal gallery ones into a common space where discrimination property is maximized.There are four advantages of the proposed approach: 1) by using the appropriate kernel function, the data becomes linearly separable, which is beneficial for recognition; 2) inspired by linear discriminant analysis(LDA), we integrate multiple discriminant factors into our objective function to enhance the discrimination property; 3) we use the gallery extended trick to improve the recognition performance for a single gallery image per person problem; 4) our approach can address the problem of matching LR non-frontal probe images with HR frontal gallery images,which is difficult for most existing face recognition techniques.Experimental evaluation on the multi-PIE dataset signifies highly competitive performance of our algorithm. | Xiaoying Wang Haifeng Hu Jianquan Gu | 2016 | IEEE/CAA Journal of Automatica Sinica2016，3，2： | 4 |
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