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| 1 | A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species显示文摘Quantitative trait loci(QTL)mapping approaches rely on the correct ordering of molecular markers along the chromosomes,which can be obtained from genetic linkage maps or a reference genome sequence.For apple(Malus domestica Borkh),the genome sequence v1 and v2 could not meet this need;therefore,a novel approach was devised to develop a dense genetic linkage map,providing the most reliable marker-loci order for the highest possible number of markers.The approach was based on four strategies:(i)the use of multiple full-sib families,(ii)the reduction of missing information through the use of HaploBlocks and alternative calling procedures for single-nucleotide polymorphism(SNP)markers,(iii)the construction of a single backcross-type data set including all families,and(iv)a two-step map generation procedure based on the sequential inclusion of markers.The map comprises 15417 SNP markers,clustered in 3 K HaploBlock markers spanning 1267 cM,with an average distance between adjacent markers of 0.37 cM and a maximum distance of 3.29 cM.Moreover,chromosome 5 was oriented according to its homoeologous chromosome 10.This map was useful to improve the apple genome sequence,design the Axiom Apple 480 K SNP array and perform multifamily-based QTL studies.Its collinearity with the genome sequences v1 and v3 are reported.To our knowledge,this is the shortest published SNP map in apple,while including the largest number of markers,families and individuals.This result validates our methodology,proving its value for the construction of integrated linkage maps for any outbreeding species. | Erica A Di Pierro Luca Gianfranceschi Mario Di Guardo Herma JJ Koehorst-van Putten Johannes W Kruisselbrink Sara Longhi Michela Troggio Luca Bianco Hélène Muranty Giulia Pagliarani Stefano Tartarini Thomas Letschka Lidia Lozano Luis Larisa Garkava-Gustavsson Diego Micheletti Marco CAM Bink Roeland E Voorrips Ebrahimi Aziz Riccardo Velasco François Laurens W Eric van de Weg | 2016 | Horticulture Research2016，3，1： | 3 |
| 2 | High-Dose daunorubicin in older patients with acute myeloid leukemia显示文摘 | Lowenberg B Ossenkoppele GJ van Putten W | 2009 | N Engl J Med2009，361，13： | 1 |
| 3 | Mutations in nucleophosmin ( NPM1 ) in acute myeloid leukemia (AML) : association with other gene abnormalities and previously estab- lished gene expression signatures and their favorable prognostic sig- nificance 显示文摘 | Verhaak R G Goudswaard C S van Putten W | 2005 | Blood2005，106，12： | 1 |
| 4 | Effect of priming with granulocyte colony-stimulating factor on the outcome of chemotherapy for acute myeloid leukemia显示文摘 | Lowenberg B van Putten W Theobald M | 2003 | N Engl J Med2003，349，8： | 1 |
| 5 | Microbial ecology of biological invasions显示文摘 | Van der Putten W H Klironomos J N Wardle D A | 2007 | The ISME Journal2007，1，1： | 1 |
| 6 | Effects of litter on substrate conditions and growth of emergent macrophytes 显示文摘 | Van Der Putten W H Peters B A M Van Der Berg M S | 1997 | New Phytologist1997，135，： | 1 |
| 7 | Linking aboveground and belowground diversity显示文摘 | DE DEYN G B VAN DER PUTTEN W H | 2005 | Trends in Ecology and Evolution2005，20，11： | 1 |
| 8 | Mutations in Nucleophosmin (NPM1) in Acute Myeloid Leukemia (AML): Association with other Gene Abnormalities and Previously Established Gene Expression Signatures and Their Favorable Prognostic Significance显示文摘 | Verhaak R G Goudswaard C S van Putten W | 2005 | Blood2005，106，12： | 1 |
| 9 | Adnexal masses in pregnancy显示文摘 | Fischer D C Van der Putten H W | 2003 | Onkologie2003，26，： | 1 |
| 10 | Control of plant species richness and zonation of functional groups along a freshwater flooding gradient显示文摘 | Lenssen J Menting F van der Putten W | 1999 | Oikos1999，86，： | 1 |
| 11 | How to be invasive显示文摘 | VAN DER PUTTEN W H | 2002 | Nature2002，417，6884： | 1 |
| 12 | Preoperative staging of non-small-cell lung cancer with positron-emission tomography 显示文摘 | Pieterman R M van Putten J W Meuzelaar J J | 2000 | N Engl J Med2000，343，4： | 1 |
| 13 | Pooled analysis of prognosis impact of urokinase-type plasminogen ac tivator and its inhibitor PAI-1 in 8377 breast cancer patients显示文摘 | LOOK MP van PUTTEN W L DUFFY MJ etal | 2002 | J Natl Cancer Inst2002，94，2： | 1 |
| 14 | Soil feedback of exotic sa- vanna grass relates to pathogen absence and mycor- rhizal selectivity显示文摘 | VAN DER PUTTEN W H KOWALCHUK G A BRINKMAN E P | 2007 | Ecology2007，88，4： | 1 |
| 15 | Preoperative staging of non-small-cell lung cancer with positron-emission tomography显示文摘 | PIETERMAN R M VAN PUTTEN J W | 2000 | N Engl J Med2000，343，： | 1 |
| 16 | Effect of priming with granulocyte colony stimulating factor on the outcome of chemotherapy for acute myeloid leukemia显示文摘 | LowenbergB Van Putten W Theobald M | 2003 | N Engl J Med2003，349，： | 1 |
| 17 | Barbarea vulgaris glucosinolate phenotypes differentially affect performance and preference of two different species of Lepidopteran herbivores 显示文摘 | van Leur H Vet L E M Van der Putten W H | 2008 | Journal of Chemical Ecology2008，34，： | 1 |
| 18 | Weekly cisplatin and daily oral etoposide is highly effective in platinum pretreated ovarian cancer显示文摘 | van der Burg M E de Wit R van Putten W L | 2002 | Br J Cancer2002，86，1： | 1 |
| 19 | The downmodulation of the foreign body reaction by cytomegalovirus encoded interleukin-10显示文摘 | van Putten S M Wübben M Hennink W E | 2009 | Biomaterials2009，30，5： | 1 |
| 20 | Die-back of Phragmites australis in European wetland:an overview of the European research program on reed die-back and progression(1993-1994)显示文摘 | | 1997 | Aquatic Botany1997，59，： | 1 |
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