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| 1 | The amazing potential of fungi:50 ways we can exploit fungi industrially显示文摘Fungi are an understudied,biotechnologically valuable group of organisms.Due to the immense range of habitats that fungi inhabit,and the consequent need to compete against a diverse array of other fungi,bacteria,and animals,fungi have developed numerous survival mechanisms.The unique attributes of fungi thus herald great promise for their application in biotechnology and industry.Moreover,fungi can be grown with relative ease,making production at scale viable.The search for fungal biodiversity,and the construction of a living fungi collection,both have incredible economic potential in locating organisms with novel industrial uses that will lead to novel products.This manuscript reviews fifty ways in which fungi can potentially be utilized as biotechnology.We provide notes and examples for each potential exploitation and give examples from our own work and the work of other notable researchers.We also provide a flow chart that can be used to convince funding bodies of the importance of fungi for biotechnological research and as potential products.Fungi have provided the world with penicillin,lovastatin,and other globally significant medicines,and they remain an untapped resource with enormous industrial potential. | Kevin D.Hyde Jianchu Xu Sylvie Rapior Rajesh Jeewon Saisamorn Lumyong Allen Grace T.Niego Pranami D.Abeywickrama Janith V.S.Aluthmuhandiram Rashika S.Brahamanage Siraprapa Brooks Amornrat Chaiyasen K.W.Thilini Chethana Putarak Chomnunti Clara Chepkirui Boontiya Chuankid Nimali I.de Silva Mingkwan Doilom Craig Faulds Eleni Gentekaki Venkat Gopalan Pattana Kakumyan Dulanjalee Harishchandra Hridya Hemachandran Sinang Hongsanan Anuruddha Karunarathna Samantha C.Karunarathna Sehroon Khan Jaturong Kumla Ruvishika S.Jayawardena Jian-Kui Liu Ningguo Liu Thatsanee Luangharn Allan Patrick G.Macabeo Diana S.Marasinghe Dan Meeks Peter E.Mortimer Peter Mueller Sadia Nadir Karaba N.Nataraja Sureeporn Nontachaiyapoom Meghan O’Brien Watsana Penkhrue Chayanard Phukhamsakda Uma Shaanker Ramanan Achala R.Rathnayaka Resurreccion B.Sadaba Birthe Sandargo Binu C.Samarakoon Danushka S.Tennakoon Ramamoorthy Siva Wasan Sriprom T.S.Suryanarayanan Kanaporn Sujarit Nakarin Suwannarach Thitipone Suwunwong Benjarong Thongbai Naritsada Thongklang Deping Wei S.Nuwanthika Wijesinghe Jake Winiski Jiye Yan Erandi Yasanthika Marc Stadler | 2019 | Fungal Diversity2019，，4： | 3 |
| 2 | Comparison between wave generation methods for numerical simulation of bimodal seas显示文摘This paper describes an investigation of the generation of desired sea states in a numerical wave model. Bimodal sea states containing energetic swell components can be coastal hazards along coastlines exposed to large oceanic fetches. Investigating the effects of long-period bimodal seas requires large computational domains and increased running time to ensure the development of the desired sea state. Long computational runs can cause mass stability issues due to the Stokes drift and wave reflection, which in turn affect results through the variation of the water level. A numerical wave flume, NEWRANS, was used to investigate two wave generation methods: the wave paddle method, allowing for a smaller domain; and the internal mass source function method, providing an open boundary allowing reflected waves to leave the domain.The two wave generation methods were validated against experimental data by comparing the wave generation accuracy and the variance of mass in the model during simulations. Results show that the wave paddle method not only accurately generates the desired sea state but also provides a more stable simulation, in which mass fluctuation has less of an effect on the water depth during the long-duration simulations. As a result, it is suggested that the wave paddle method with active wave absorption is preferable to the internal wave maker option when investigating intermediate-depth long-period bimodal seas for long-duration simulations. | Daniel A.Thompson Harshinie Karunarathna Dominic Reeve | 2016 | Water Science and Engineering2016，9，1： | 2 |
| 3 | One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76-100 (2020)显示文摘This is a continuation of a series focused on providing a stable platform for the taxonomy of phytopathogenic fungi and fungus-like organisms.This paper focuses on one family:Erysiphaceae and 24 phytopathogenic genera:Armillaria,Barrio-psis,Cercospora,Cladosporium,Clinoconidium,Colletotrichum,Cylindrocladiella,Dothidotthia,,Fomitopsis,Ganoderma,Golovinomyces,Heterobasidium,Meliola,Mucor,Neoerysiphe,Nothophoma,Phellinus,Phytophthora,Pseudoseptoria,Pythium,Rhizopus,Stemphylium,Thyrostroma and Wojnowiciella.Each genus is provided with a taxonomic background,distribution,hosts,disease symptoms,and updated backbone trees.Species confirmed with pathogenicity studies are denoted when data are available.Six of the genera are updated from previous entries as many new species have been described. | Ruvishika S.Jayawardena Kevin D.Hyde Yi Jyun Chen Viktor Papp Balázs Palla Dávid Papp Chitrabhanu S.Bhunjun Vedprakash G.Hurdeal Chanokned Senwanna Ishara S.Manawasinghe Dulanjalee L.Harischandra Ajay Kumar Gautam Shubhi Avasthi Boontiya Chuankid Ishani D.Goonasekara Sinang Hongsanan XiangYu Zeng Kapila K.Liyanage NingGuo Liu Anuruddha Karunarathna Kalani K.Hapuarachchi Thatsanee Luangharn Olivier Raspé Rashika Brahmanage Mingkwan Doilom Hyang B.Lee Liu Mei Rajesh Jeewon Naruemon Huanraluek Napalai Chaiwan Marc Stadler Yong Wang | 2020 | Fungal Diversity2020，，4： | 2 |
| 4 | Numerical simulation of wave damping over porous seabeds显示文摘 | KARUNARATHNA S A S A LIN P Z | 2006 | Coastal Engineering2006，53，： | 1 |
| 5 | FOXM1 targets NBS1 to regulate DNA damage-induced senescence and epirubicin resistance 显示文摘 | Khongkow P Karunarathna U Khongkow M | 2014 | Oncogene2014，33，32： | 1 |
| 6 | An experimental study of rip channel flow显示文摘 | Dronen N Karunarathna H Fredsoe J | 2002 | Coastal Engineering2002，45，3： | 1 |
| 7 | Taxonomic circumscription of Diaporthales based on multigene phylogeny and morphology显示文摘Demarcation of family,genus and species boundaries in the Diaporthales has been tentative due to uninformative illus-trations and descriptions,overlapping morphological characteristics,misplacement or poor condition of type specimens and shortage of molecular data from ex-type cultures.In this study,we obtained the type specimens or other authentic specimens of diaporthalean taxa from worldwide fungaria.We examined,described and illustrated them.This study is based on morphological characters from type or authentic specimens,details from protologue and original illustrations and molecular data obtained from GenBank.Combined analyses of nrITS,nrLSU,RPB2 and TEF1-a sequence data were used to construct the molecular phylogeny.Additionally,we provided separate phylogenetic trees for families when necessary to show the generic distribution within these families based on suitable gene markers.Based on morphology and phylogeny,we treat 17 genera previously assigned to Diaporthales genera incertae sedis within several families.For some genera we have designated new generic types as they are lacking type species or type species have affiliations with other families.We exclude Anisomycopsis from Diaporthales and place it in Xylariomycetidae genera incertae sedis.Tirisporellaceae,which was previously placed in Tirisporellales is placed in Diaporthales based on phylogeny and morphology.A new combi-nation,Dendrostoma leiphaemia propose for Amphiporthe leiphaemia(Fr.)Butin.Based on the morphological characters and molecular data we accept 27 families and 138 genera within Diaporthales,24 genera in Diaporthales genera incertae sedis and one genus in Xylariomycetidae genera incertae sedis.We provide notes for genera in Diaporthales genera incertae sedis,and excluded and doubtful genera are listed with notes on their taxonomy and phylogeny. | Indunil C.Senanayake Rajesh Jeewon Putarak Chomnunti Dhanushka N.Wanasinghe Chada Norphanphoun Anuruddha Karunarathna Dhandevi Pem Rekhani H.Perera Erio Camporesi Eric H.C.McKenzie Kevin D.Hyde Samantha C.Karunarathna | 2018 | Fungal Diversity2018，，6： | 1 |
| 8 | Numerical simulation olr wave damping over porous seabeds显示文摘 | KARUNARATHNA S A S A LIN Peng-zhi | 2006 | Coastal Engineering2006，53，： | 1 |
| 9 | On the prediction of long-term morphodynamic response of estuarine systems to sea level rise and human interference显示文摘 | Reeve D E Karunarathna H | | 0，，： | 1 |
| 10 | Refined families of Dothideomycetes:orders and families incertae sedis in Dothideomycetes显示文摘Numerous new taxa and classifications of Dothideomycetes have been published following the last monograph of families of Dothideomycetes in 2013.A recent publication by Honsanan et al.in 2020 expanded information of families in Dothideo-mycetidae and Pleosporomycetidae with modern classifications.In this paper,we provide a refined updated document on orders and families incertae sedis of Dothideomycetes.Each family is provided with an updated description,notes,including figures to represent the morphology,a list of accepted genera,and economic and ecological significances.We also provide phylogenetic trees for each order.In this study,31 orders which consist 50 families are assigned as orders incertae sedis in Dothideomycetes,and 41 families are treated as families incertae sedis due to lack of molecular or morphological evidence.The new order,Catinellales,and four new families,Catinellaceae,Morenoinaceae Neobuelliellaceae and Thyrinulaceae are introduced.Seven genera(Neobuelliella,Pseudomicrothyrium,Flagellostrigula,Swinscowia,Macroconstrictolumina,Pseudobogoriella,and Schummia)are introduced.Seven new species(Acrospermum urticae,Bogoriella complexoluminata,Dothiorella ostryae,Dyfrolomyces distoseptatus,Macroconstrictolumina megalateralis,Patellaria microspora,and Pseu-domicrothyrium thailandicum)are introduced base on morphology and phylogeny,together with two new records/reports and five new collections from different families.Ninety new combinations are also provided in this paper. | Sinang Hongsanan Kevin D.Hyde Rungtiwa Phookamsak Dhanushka N.Wanasinghe Eric H.C.McKenzie V.Venkateswara Sarma Robert Lücking Saranyaphat Boonmee Jayarama D.Bhat Ning-Guo Liu Danushka S.Tennakoon Dhandevi Pem Anuruddha Karunarathna Shu-Hua Jiang Gareth E.B.Jones Alan J.L.Phillips Ishara S.Manawasinghe Saowaluck Tibpromma Subashini C.Jayasiri Diana Sandamali Ruvishika S.Jayawardena Nalin N.Wijayawardene Anusha H.Ekanayaka Rajesh Jeewon Yong-Zhong Lu Chayanard Phukhamsakda Asha J.Dissanayake Xiang-Yu Zeng Zong-Long Luo Qing Tian Kasun M.Thambugala Dongqin Dai Milan C.Samarakoon K.W.Thilini Chethana Damien Ertz Mingkwan Doilom Jian-Kui(Jack)Liu Sergio Pérez-Ortega Ave Suija Chanokned Senwanna Subodini N.Wijesinghe Mekala Niranjan Sheng-Nan Zhang Hiran A.Ariyawansa Hong-Bo Jiang Jin-Feng Zhang Chada Norphanphoun Nimali Ide Silva Vinodhini Thiyagaraja Huang Zhang Jadson D.P.Bezerra Ricardo Miranda-González AndréAptroot Hiroyuki Kashiwadani Dulanjalee Harishchandra Emmanuël Sérusiaux Pranami DAbeywickrama Dan-Feng Bao Bandarupalli Devadatha Hai-Xia Wu Kwang Hee Moon Cecile Gueidan Felix Schumm Digvijayini Bundhun Ausana Mapook Jutamart Monkai Chitrabhanu S.Bhunjun Putarak Chomnunti Satinee Suetrong Napalai Chaiwan Monika C.Dayarathne Jing Yang Achala R.Rathnayaka Jian-Chu Xu Jiesheng Zheng Gang Liu Yao Feng Ning Xie | 2020 | Fungal Diversity2020，，6： | 1 |
| 11 | Performance of a data-driven technique applied to changes in wave height and its effect on beach response显示文摘In this study the medium-term response of beach profiles was investigated at two sites: a gently sloping sandy beach and a steeper mixed sand and gravel beach. The former is the Duck site in North Carolina, on the east coast of the USA, which is exposed to Atlantic Ocean swells and storm waves, and the latter is the Milford-on-Sea site at Christchurch Bay, on the south coast of England, which is partially sheltered from Atlantic swells but has a directionally bimodal wave exposure. The data sets comprise detailed bathymetric surveys of beach profiles covering a period of more than 25 years for the Duck site and over 18 years for the Milford-on-Sea site. The structure of the data sets and the data-driven methods are described. Canonical correlation analysis(CCA) was used to find linkages between the wave characteristics and beach profiles. The sensitivity of the linkages was investigated by deploying a wave height threshold to filter out the smaller waves incrementally. The results of the analysis indicate that, for the gently sloping sandy beach, waves of all heights are important to the morphological response. For the mixed sand and gravel beach, filtering the smaller waves improves the statistical fit and it suggests that low-height waves do not play a primary role in the medium-term morphological response, which is primarily driven by the intermittent larger storm waves. | José M.Horrillo-Caraballo Harshinie Karunarathna Shun-qi Pan Dominic Reeve | 2016 | Water Science and Engineering2016，9，1： | 1 |
| 12 | Numerical simulation of wave damping over porous seabeds 显示文摘 | Karunarathna S Lin P | 2006 | Coastal Engineering2006，53，： | 1 |
| 13 | Long-term morphodynamic evolution of estuaries:an inverse problem显示文摘 | Karunarathna H Reeve D Spivack M | | 0，，： | 1 |
| 14 | Major clades in tropical Agaricus显示文摘 | ZHAO RL KARUNARATHNA S RASPE O | 2011 | Fungal Divers2011，51，1： | 1 |
| 15 | Major clades in tropical Agaricus显示文摘 | Zhao RL Karunarathnas Rasps O | 2011 | Fungal Divers2011，51，1： | 1 |
| 16 | Lentinus giganteus revisited: New collections from Sri Lanka and Thailand显示文摘 | Karunarathna S C Yang Z L Raspe O | 2011 | Myeotaxon2011，118，1： | 1 |
| 17 | A statistical-process based approach for modelling beach profile variability显示文摘 | Doug Pender Harshinie Karunarathna | 2013 | Coastal Engineering2013，，： | 1 |
| 18 | Influence of pesticide regulation on acute poisoning deaths in Sri Lanka显示文摘 | Roberts DM Karunarathna A Buckley NA | 2003 | Bulletin of the World Health Organization2003，，11： | 1 |
| 19 | First successful domestication of a white strain of Auricularia cornea from Thailand显示文摘Intraspecies colour variations in cultivated edible mushrooms present novel and potentially valuable alternatives to the research and cultivation industries.In this study,we collected,identified,and domesticated a white strain of Auricularia cornea from Thailand.The brown strain of A.cornea is one of the top two species of Auricularia cultivated and traded in Asia.Since both white and brown phenotypes of A.cornea belong to a single species,we established their similarities or differences.Both morphological characteristics and phylogenetic analysis of ITS rDNA sequence data were used to confirm the taxonomic placement of the white A.cornea strain in the same clade with the brown A.cornea.Nutritional analysis showed that fat,fiber,protein,and total soluble sugar contents of the white A.cornea were significantly higher than the commercially used brown strain.The melanin content of the white strain of A.cornea(less than 1.5 mg/100g)was not significantly different from that of the brown strain.This discovery may create new opportunities for the mushroom growing industry and for smallholder farmers in Asia. | Bandara AR Mortimer PE Vadthanarat S Xingrong P Karunarathna SC Hyde KD Kakumyan P Xu J | 2020 | Studies in Fungi2020，5，1： | 1 |
| 20 | Morphodynamics of sandy beaches under the influence of storm sequences:Current research status and future needs显示文摘This paper reviews and discusses the current research status, trends, and future needs in the field of beach morphodynamics under the influence of storm sequences.The paper reviews how the three main research methods, field investigations, numerical modelling, and physical modelling, have been used to study beach morphodynamics during storm sequences.Available quantitative definitions of storm sequences at different sites are presented and discussed.It is shown that the definition of storm sequences is site-specific and requires knowledge of the storm climate, beach characteristics, and the temporal scale of beach recovery.Subsequently, the paper brings together currently available approaches aimed at describing the effect of storm sequences on beach erosion in a general way.The importance of storm chronology and the effects of an extreme storm within a sequence of storms are highlighted.Following that, the more poorly studied aspect of beach recovery in between storms within a sequence is discussed.Three indicators for defining beach recovery, namely the shoreline location, sediment volumes, and the beach state, are identified and compared.Finally, important research needs, including the need for detailed physical modelling, are identified. | Sonja Eichentopf Harshinie Karunarathna Jose M.Alsina | 2019 | Water Science and Engineering2019，12，3： | 1 |
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