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| 1 | Complementary DNA sequencing (cDNA): an eff ective approach for assessing the diversity and distribution of marine benthic ciliates along hydrographic gradients显示文摘The Yellow Sea Cold Water Mass(YSCWM)is a distinct hydrographic phenomenon of the Yellow Sea,and the distribution pattern of meio-and macrobenthos diff ers inside and outside of the YSCWM.However,such a pattern has never been observed in the microbenthic ciliate communities.Therefore,we hypothesized that benthic ciliates followed a similar distribution pattern as meio-and macrobenthos,but this pattern has not been uncovered by morphological methods.We evaluated the diversity and distribution of benthic ciliates at fi ve stations along hydrographic gradients across the YSCWM and adjacent shallow water by using morphology and DNA and complementary DNA(cDNA)high-throughput sequencing of the V4 region of 18S rRNA gene.Results showed that the diversity of benthic ciliates detected by DNA(303 OTUs),and the cDNA(611 OTUs)sequencing was much higher than that detected by the morphological method(79 species).Morphological method detected roughly diff erent ciliate communities inside and outside of the YSCWM,but without statistical signifi cance.No clear pattern was obtained by DNA sequencing.In contrast,cDNA sequencing revealed a distinct distribution pattern of benthic ciliate communities like meioand macrobenthos,which coincided well with the results of the environmental parameter analysis.More than half of the total sequences detected by DNA sequencing belonged to planktonic ciliates,most(if not all)of which were recovered from historic DNA originating through the sedimentation of pelagic forms because none of them were observed morphologically.The irrelevant historic DNA greatly infl uenced the recovery of rare species and thus limited the understanding of the benthic ciliate diversity and distribution.Our research indicates that the methods used have signifi cant eff ects on the investigation of benthic ciliate communities and highlights that cDNA sequencing has great advantages in estimating the diversity and distribution of benthic ciliates,as well as the potential for benthic environmental assessments. | Pingping HUANG Feng ZHAO Kuidong XU | 2021 | Journal of Oceanology and Limnology2021，39，1： | 3 |
| 2 | Spatial distribution of planktonic ciliates in the western Pacifc Ocean: along the transect from Shenzhen (China) to Pohnpei (Micronesia)显示文摘Planktonic ciliates have been recognized as major consumers of nano-and picoplankton in pelagic ecosystems,playing pivotal roles in the transfer of matter and energy in the microbial loop.However,due to the difculties in identifcation,the species composition of ciliate assemblages,especially for the small,fragile,and naked species that usually dominate the ciliate communities in the oceanic waters,remains largely unknown.In the present study,22 stations along the transect from Shenzhen(China)to Pohnpei(Micronesia)were sampled for the enumeration of picoplankton and nanofagellates.In addition,pigment analysis of major phytoplankton groups along with the measurements of environmental variables including temperature,salinity,and nutrients were also carried out.Ciliates were identifed at species level using quantitative protargol stain to reveal the species composition and their distribution patterns from of-shore to open ocean.Ciliate abundance was positively correlated with phosphate,silicate,and pico-sized pigmented eukaryotes(PPEs),whereas the biomass was closely related with PPEs,heterotrophic nanofagellates,and chlorophytes.The combination of silicate and pigmented nanofagellates was identifed as the major factor driving the ciliate community composition.The close relationship between silicate and ciliate abundance and community structure needs further validation based on more data collected from oceanic waters.Our study showed the necessity of using techniques that can reveal the community composition at higher taxonomic resolutions in future studies on ciliates. | Hungchia Huang Jinpeng Yang Shixiang Huang Bowei Gu Ying Wang Lei Wang Nianzhi Jiao Dapeng Xu | 2021 | Marine Life Science & Technology2021，3，1： | 2 |
| 3 | 近海水体环境DNA沉降对沉积物中纤毛虫分子多样性评估的影响显示文摘在陆架海区沉积物中,DNA高通量测序技术可检获大量浮游寡毛类和舞毛类等非底栖纤毛虫,这些源于水体的环境DNA(eDNA)如何影响对沉积物中纤毛虫分子多样性的评估,以及影响程度如何尚不明确。本研究选取了黄海冷水团中的两个站位,通过提取水体和沉积物中DNA和RNA,并采用直接提取法和洗脱法提取沉积物DNA,结合DNA和cDNA测序技术,探讨了水体和沉积物中纤毛虫分子多样性的关系。研究表明,基于洗脱DNA法、直接提取DNA法和cDNA法获得的沉积物中纤毛虫OTUs数分别为451、312和324个,其中211个OTUs同时由三种方法检获;而164个OTUs仅通过洗脱DNA法检获,其中89%为相对丰度低于0.1%的稀有类群。直接提取DNA法所获的寡毛类和舞毛类序列数占比达46%,而在洗脱DNA法和cDNA法中占比仅为12%和10%。沉积物中检获的43%—71%的舞毛类和寡毛类OTUs与浅层水(<40m)共有,仅19%—29%与深层水(>40m)共有,且这些共有的OTUs可同时在浅层水中检获。本研究发现,对沉积物中纤毛虫分子多样性评价造成影响的浮游类群主要来自浅层水,洗脱DNA与cDNA测序均可显著降低浮游类群eDNA的影响。鉴于洗脱DNA法较之cDNA法操作更简便,且避免了反转录过程导致的偏差,因此推荐用于对近海沉积物中纤毛虫等真核微生物的分子多样性研究。 | 黄平平 赵峰 徐奎栋 | 2020 | 海洋与湖沼2020，51，3： | 2 |
| 4 | 中国北方砂栖纤毛虫的空间分布及其驱动因素显示文摘为深入了解不同地理尺度因素对驱动微型生物群落空间结构的相对影响,本研究于2020年10月调查了中国北方14个砂质潮间带的砂栖纤毛虫群落。研究结果如下:(1)检获纤毛虫105种,隶属26目65属,按丰度优势依次为帆口目、小胸目和环毛目;(2)黄海、渤海两区域的环境因子存在显著差异,但纤毛虫群落组成趋于相似;(3)偏Mental分析显示,环境条件较空间距离在纤毛虫群落组成的驱动中更为重要,其中盐度、粒度和海滩坡度是解释纤毛虫空间分布的最优环境因子组合,而潮差和溶解无机氮含量是次要影响因子;(4)沿海区域微型生物的强扩散效应在一定程度上掩盖了环境异质性影响。综上,由于沿海生态系统中微型生物受到更少扩散限制,在空间分布格局的形成上,环境条件的影响比空间距离更重要。本研究为海洋微型生物地理学提供了基础数据,有助于在全球变化背景下制定沙滩管理和保护规划。 | 陈欣怡 粱月琴 郑伊珊 吴成倩 许媛 | 2022 | 海洋学报2022，44，10： | 0 |
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